- Comparative evolution: Is the data informative? 31 Dec 2010
- DoE renewal and a year in review 24 Dec 2010
- Sun: Visualizing my coding over the past year 20 Dec 2010
- Thurs: writing section on comparing to AIC 16 Dec 2010
- Weds: Example sets & more EC2 15 Dec 2010
- Tues: evolution thoughts while writing... 14 Dec 2010
- Back to Writing 13 Dec 2010
- Practice SICB Presentation 08 Dec 2010
- Mapping out SICB Presentation: Is your phylogeny informative? 07 Dec 2010
- follow up from Fri discussions: Revisiting post-predictive evaluation 06 Dec 2010
- CPB : David Collar 01 Dec 2010
- Challenges in estimating phylogenetic signal 29 Nov 2010
- Power in simple tests 22 Nov 2010
- Two questions 21 Nov 2010
- Sat: evolution -- porting tree transformations to OUCH? 20 Nov 2010
- Fri: extending Geiger to Monte Carlo method 19 Nov 2010
- Thurs: evolution likelihood 18 Nov 2010
- Weds 18 Nov 2010
- evolution today: Discussion groups, writing, etc 15 Nov 2010
- Thursday: Post-predictive verification exploration; writing and figures 11 Nov 2010
- evolution statistics 11 Nov 2010
- Tuesday - SDEs then back to phylogenetics 10 Nov 2010
- Monday and some phylogenetics 08 Nov 2010
- Friday: Evolution reading, writing 05 Nov 2010
- Short note: Trait diversification rates controlled by other traits 30 Oct 2010
- Status update 15 Oct 2010
- Writing continues 14 Oct 2010
- Wednesday 13 Oct 2010
- a day of writing 12 Oct 2010
- Still writing 11 Oct 2010
- LR Manuscript 05 Oct 2010
- Monday 04 Oct 2010
- Likelihood Ratio Paper 03 Oct 2010
- Adaptive Dynamics Updates 30 Sep 2010
- Writing 15 Sep 2010
- Writing 14 Sep 2010
- Peter meeting 13 Sep 2010
- Meeting with Sam 07 Sep 2010
- evolution Research Abstract 04 Sep 2010
- Entry title 01 Sep 2010
- Tuesday 31 Aug 2010
- Adaptive Dynamics 30 Aug 2010
- Likelihood ratio ToDo 27 Aug 2010
- Likelihood Ratio Paper- Power in Trees 26 Aug 2010
- Likelihood Ratio Manuscript 25 Aug 2010
- Writing 19 Aug 2010
- Adaptive Dynamics 13 Aug 2010
- Adaptive Dynamics 12 Aug 2010
- Adaptive Dynamics 11 Aug 2010
- Likelihood ratio update 10 Aug 2010
- Batch Data 05 Aug 2010
- Data Format functions 04 Aug 2010
- Writing 03 Aug 2010
- Open Science Summit Day 3 31 Jul 2010
- Open Science Summit day 2 30 Jul 2010
- Open Science Summit 29 Jul 2010
- Cetartiodactyle data 28 Jul 2010
- Parameter Estimates for Labrid-Parrotfish model 27 Jul 2010
- Parrotfish Model choice 26 Jul 2010
- Writing 23 Jul 2010
- Writing 22 Jul 2010
- Writing 21 Jul 2010
- Writing 20 Jul 2010
- Wainwright Meeting 19 Jul 2010
- Parrotfish-Wrasse example 15 Jul 2010
- Organizing analyses, data, codes 14 Jul 2010
- Bootstrapping the independent alpha-sigma models 13 Jul 2010
- Multivariate normal random variables 12 Jul 2010
- Status - Thoughts 09 Jul 2010
- Evolutionary Regime Shift examples 08 Jul 2010
- Multitype OU process interfaces 07 Jul 2010
- Generalizing the multi-type OU process- continued 02 Jul 2010
- Multitype OU Processes with varying alpha and sigma 01 Jul 2010
- iEvoBio day two 30 Jun 2010
- iEvoBio day one 29 Jun 2010
- Evolution 2010 Day 3 28 Jun 2010
- Evolution 2010 Day 2 27 Jun 2010
- Evolution 2010 26 Jun 2010
- CSGF Conference Thursday 24 Jun 2010
- CSGF Conference Day 2 23 Jun 2010
- CSGF Conference- Tuesday 22 Jun 2010
- CSGF Conference- HPC Workshop 21 Jun 2010
- Wainwright Lab Meeting 16 Jun 2010
- Graham & Peter Meeting 09 Jun 2010
- Making slides for Evolution meeting 08 Jun 2010
- Implementing the new approach 06 Jun 2010
- Likelihood Calculation 05 Jun 2010
- Comparative Phylogenetics Talk 04 Jun 2010
- CSGF Survey 31 May 2010
- Adaptive Dynamics 13 May 2010
- Roi and Sam Comparative Phylogenetics R Workshop 12 May 2010
- Peter Meeting 11 May 2010
- Primates 05 May 2010
- Adaptive Dynamics 04 May 2010
- Adaptive Dynamics 03 May 2010
- Phase1 01 May 2010
- Coexistence Of The Early Dimorphism 01 May 2010
- Adaptive Dynamics 30 Apr 2010
- Adaptive Dynamics 29 Apr 2010
- Meetings 28 Apr 2010
- iEvoBio lightning talk 27 Apr 2010
- Adaptive Dynamics 26 Apr 2010
- Adaptive Dynamics 23 Apr 2010
- Adaptive Dynamics 22 Apr 2010
- Adaptive Dynamics 21 Apr 2010
- Waiting Time 20 Apr 2010
- R-sig-phylo 20 Apr 2010
- Research 19 Apr 2010
- MATICCE 18 Apr 2010
- iEvoBio Submission 16 Apr 2010
- Branching Paper 15 Apr 2010
- Wednesday 14 Apr 2010
- Tuesday 13 Apr 2010
- Primate chronogram 12 Apr 2010
- Research 09 Apr 2010
- Comparative Phylogenetics Notebook 08 Apr 2010
- Research 06 Apr 2010
- Research 05 Apr 2010
- Research 04 Apr 2010
- Research 02 Apr 2010
- Comparative Phylogenetics Notebook 31 Mar 2010
- Research 30 Mar 2010
- Still puzzling on LR 26 Mar 2010
- Research 25 Mar 2010
- Parallel R 24 Mar 2010
- Bootstrapping Likelihood ratios 23 Mar 2010
- Phylogenetic Tree formats 22 Mar 2010
- Research 20 Mar 2010
- Research 19 Mar 2010
- Research 18 Mar 2010
- Research 17 Mar 2010
- Graham & Peter Meeting 16 Mar 2010
- Computing 15 Mar 2010
- Post-Workshop 14 Mar 2010
- Bodega Workshop Presentations 12 Mar 2010
- Phylogenetics Workshop Day 5 11 Mar 2010
- Bodega Workshop Day 4 10 Mar 2010
- Bodega Phylogenetics Workshop Day 3 09 Mar 2010
- Bodega Phylogenetics Workshop Day 2 08 Mar 2010
- Bodega Phylogenetics Workshop Day 1 07 Mar 2010
- Friday 05 Mar 2010
- Big Picture Comparative Phylogenetics 04 Mar 2010
- Solution to the strange behavior in ouch 03 Mar 2010
- Power in trees 02 Mar 2010
- Thursday 25 Feb 2010
- Implementing an example of low and high power trees 20 Feb 2010
- Power in trees continues 19 Feb 2010
- Power in Trees 18 Feb 2010
- Meeting Goals 17 Feb 2010
- Updating manuscript 16 Feb 2010
- Parametric bootstrapping 15 Feb 2010
- Speciation 14 Feb 2010
- Follow-up on Parametric Bootstrapping 10 Feb 2010
- Meeting with Graham and Peter 09 Feb 2010
- Exploring Difficulties with Existing Methods continued 08 Feb 2010
- Exploring Difficulties with Existing Methods 07 Feb 2010
- Lunch with Wainwright Lab 05 Feb 2010
- Progresschallenges 18 Jan 2010
- CPB thesis proposal 10 Jan 2010
- Stochastic limits to evolutionary branching 30 Dec 2010
- Parameter exploration in adaptive dynamics branching 30 Dec 2010
- adaptive-dynamics Simulations 29 Dec 2010
- DoE renewal and a year in review 24 Dec 2010
- Warning signals manuscript 10 Dec 2010
- Exploring Power in Warning Signals 09 Dec 2010
- Identifying Warning Signals 04 Dec 2010
- Tues: Fitting the limiting OU models to each bifurcation 30 Nov 2010
- Further treatment of the limiting models 29 Nov 2010
- Likelihoods for quadratic models cont 28 Nov 2010
- Implementing Likelihoods for quadratic models 27 Nov 2010
- Warning signals: Likelihoods Straight-up 24 Nov 2010
- Tues seminar 16 Nov 2010
- Getting the details right on the Fourier Transform approach to likelihood 03 Nov 2010
- A new twist on the approach 28 Oct 2010
- Red Noise (aside exercise) 28 Oct 2010
- Warning Signals -- Where are we now? 27 Oct 2010
- Correcting for the mean dynamics 26 Oct 2010
- Wrong picture, wrong model: why warning signals don't look like rare events 25 Oct 2010
- Warning Signals 2 21 Oct 2010
- Spatial Warning Signals, power, etc 21 Oct 2010
- ecology Abstract 20 Oct 2010
- Adaptive Dynamics Abstract 20 Oct 2010
- Warning Signals 19 Oct 2010
- Thursday 30 Sep 2010
- Power plots 14 Sep 2010
- Meeting with Alan 10 Sep 2010
- Updating examples of stochastic structured population dynamics 02 Sep 2010
- Summer Review 30 Aug 2010
- Entry title 19 Aug 2010
- Warning Signals -- still in code development 18 Aug 2010
- Warning Signals 17 Aug 2010
- Warning Signals 16 Aug 2010
- Warning Signals 15 Aug 2010
- Warning Signals 12 Aug 2010
- Warning Signals 10 Aug 2010
- Warning Signals by model choice 09 Aug 2010
- Warning Signals 08 Aug 2010
- Reading 07 Aug 2010
- Ensemble simulations of beetle dynamics 07 Jul 2010
- Questions 10 Jun 2010
- Entry title 03 Jun 2010
- Actually starting at Arkin Lab 02 Jun 2010
- Gamma Waiting times on individual level 01 Jun 2010
- Individual based simulation with gamma waiting times 29 May 2010
- Conference call w- Bob and Brett 28 May 2010
- Summary of Structured Population noise so far 27 May 2010
- Rethinking Beetles Noise 26 May 2010
- Bug fixed! 25 May 2010
- Status on Structured Populations 24 May 2010
- Puzzled over the two-step jump process results 21 May 2010
- Beetle dynamics exploration & adjustments 20 May 2010
- Noisy Beetles 19 May 2010
- Noisy beetles 18 May 2010
- Annual Progress Report 17 May 2010
- General matrix form and correcting equations 16 May 2010
- Large Intrinsic Noise 15 May 2010
- Structured Population Dynamics 14 May 2010
- Beetles workshop Day 2 13 May 2010
- Hastings Beetle Workshop 12 May 2010
- Demographic Noise 11 May 2010
- Alan Meeting 10 May 2010
- Warning Signals with SDEs 09 May 2010
- Likelihood calculation 07 May 2010
- Goals 06 May 2010
- Wednesday 05 May 2010
- Alan Meeting 04 May 2010
- Alan Meeting 20 Apr 2010
- Effective warning signals 11 Apr 2010
- Research 08 Apr 2010
- Research 07 Apr 2010
- Towards a meaningful warning signal metric 06 Apr 2010
- Warning Signals Research 03 Apr 2010
- Warning Signals 02 Apr 2010
- Research 01 Apr 2010
- Research 31 Mar 2010
- Entry title 25 Mar 2010
- Meeting 05 Mar 2010
- Parallel at last 01 Mar 2010
- Parallelizing Code 28 Feb 2010
- Friday 26 Feb 2010
- The Ergodicity Question- Time averaging vs Ensemble averaging 25 Feb 2010
- Derin And Alan Meeting 24 Feb 2010
- Comparing to Analytic Dynamics 23 Feb 2010
- Monday 22 Feb 2010
- Hastings Meeting 17 Feb 2010
- Implementing warning signals metrics 15 Feb 2010
- Meeting w- Alan 10 Feb 2010
- Code Development for Exploring Regimes Shifts 09 Feb 2010
- Updates to Code 08 Feb 2010
- Hastings Meeting 03 Feb 2010
- The Lab Notebook Goes Open 02 Feb 2010
- Open Notebook Science Abstract 30 Dec 2010
- Writing, Cloud Computing, and #scio11 23 Dec 2010
- Sun: Visualizing my coding over the past year 20 Dec 2010
- Citations 11 Dec 2010
- socialR: Reproducible Research & Notebook integration with R 11 Dec 2010
- Thoughts on the New Policies for Data Archiving at NSF and in Common Journals 03 Dec 2010
- Making R twitter? 21 Nov 2010
- evolution today: Discussion groups, writing, etc 15 Nov 2010
- Welcome to my Lab Notebook 08 Nov 2010
- Friday: Evolution reading, writing 05 Nov 2010
- Thursday 05 Nov 2010
- Reviews, organization, rewrites 03 Nov 2010
- Wrong picture, wrong model: why warning signals don't look like rare events 25 Oct 2010
- Lab Notebooks 07 Sep 2010