Tags

adaptive-dynamics

• Stochastic limits to evolutionary branching 30 Dec 2010
• Parameter exploration in adaptive dynamics branching 30 Dec 2010
• adaptive-dynamics Simulations 29 Dec 2010
• Adaptive Dynamics Abstract 20 Oct 2010
• Likelihood Ratio Paper 03 Oct 2010
• Adaptive Dynamics Updates 30 Sep 2010
• Adaptive Dynamics 30 Aug 2010
• Adaptive Dynamics 13 Aug 2010
• Adaptive Dynamics 12 Aug 2010
• Adaptive Dynamics 11 Aug 2010
• Annual Progress Report 17 May 2010
• Adaptive Dynamics 13 May 2010
• Adaptive Dynamics 04 May 2010
• Adaptive Dynamics 03 May 2010
• Phase1 01 May 2010
• Coexistence Of The Early Dimorphism 01 May 2010
• Adaptive Dynamics 30 Apr 2010
• Adaptive Dynamics 26 Apr 2010
• Adaptive Dynamics 23 Apr 2010
• Adaptive Dynamics 22 Apr 2010
• Adaptive Dynamics 21 Apr 2010
• Waiting Time 20 Apr 2010
• Branching Paper 15 Apr 2010
• Speciation 14 Feb 2010
• Progresschallenges 18 Jan 2010

tribolium

• Ensemble simulations of beetle dynamics 07 Jul 2010
• Conference call w- Bob and Brett 28 May 2010
• Summary of Structured Population noise so far 27 May 2010
• Rethinking Beetles Noise 26 May 2010
• Bug fixed! 25 May 2010
• Puzzled over the two-step jump process results 21 May 2010
• Beetle dynamics exploration & adjustments 20 May 2010
• Noisy Beetles 19 May 2010
• Noisy beetles 18 May 2010
• Annual Progress Report 17 May 2010
• Structured Population Dynamics 14 May 2010
• Beetles workshop Day 2 13 May 2010
• Hastings Beetle Workshop 12 May 2010
• Demographic Noise 11 May 2010
• Alan Meeting 10 May 2010
• Likelihood calculation 07 May 2010
• Wednesday 05 May 2010
• Alan Meeting 04 May 2010
• Meeting w- Alan 10 Feb 2010
• Hastings Meeting 03 Feb 2010
• The Lab Notebook Goes Open 02 Feb 2010

warning-signals

• Warning signals manuscript 10 Dec 2010
• Exploring Power in Warning Signals 09 Dec 2010
• Identifying Warning Signals 04 Dec 2010
• Tues: Fitting the limiting OU models to each bifurcation 30 Nov 2010
• Further treatment of the limiting models 29 Nov 2010
• Likelihoods for quadratic models cont 28 Nov 2010
• Implementing Likelihoods for quadratic models 27 Nov 2010
• Warning signals: Likelihoods Straight-up 24 Nov 2010
• Getting the details right on the Fourier Transform approach to likelihood 03 Nov 2010
• A new twist on the approach 28 Oct 2010
• Warning Signals -- Where are we now? 27 Oct 2010
• Correcting for the mean dynamics 26 Oct 2010
• Wrong picture, wrong model: why warning signals don't look like rare events 25 Oct 2010
• Warning Signals 2 21 Oct 2010
• Spatial Warning Signals, power, etc 21 Oct 2010
• Warning Signals 19 Oct 2010
• Entry title 19 Aug 2010
• Warning Signals -- still in code development 18 Aug 2010
• Warning Signals 17 Aug 2010
• Warning Signals 16 Aug 2010
• Warning Signals 12 Aug 2010
• Warning Signals 10 Aug 2010
• Warning Signals 08 Aug 2010
• Reading 07 Aug 2010
• Annual Progress Report 17 May 2010
• Alan Meeting 10 May 2010
• Warning Signals with SDEs 09 May 2010
• Goals 06 May 2010
• Alan Meeting 04 May 2010
• Alan Meeting 20 Apr 2010
• Effective warning signals 11 Apr 2010
• Research 08 Apr 2010
• Warning Signals 02 Apr 2010
• Meeting 05 Mar 2010
• The Ergodicity Question- Time averaging vs Ensemble averaging 25 Feb 2010
• Derin And Alan Meeting 24 Feb 2010
• Comparing to Analytic Dynamics 23 Feb 2010
• Hastings Meeting 17 Feb 2010
• Implementing warning signals metrics 15 Feb 2010
• Meeting w- Alan 10 Feb 2010
• The Lab Notebook Goes Open 02 Feb 2010

pmc

• Likelihood Ratio Paper 03 Oct 2010
• Likelihood Ratio Paper- Power in Trees 26 Aug 2010
• Wainwright Meeting 19 Jul 2010
• Comparative Phylogenetics Notebook 08 Apr 2010
• Research 05 Apr 2010
• Research 02 Apr 2010
• Research 30 Mar 2010
• Still puzzling on LR 26 Mar 2010
• Research 25 Mar 2010
• Parallel R 24 Mar 2010
• Bootstrapping Likelihood ratios 23 Mar 2010
• Research 20 Mar 2010
• Research 19 Mar 2010
• Research 18 Mar 2010
• Research 17 Mar 2010
• Solution to the strange behavior in ouch 03 Mar 2010
• Power in trees 02 Mar 2010
• Implementing an example of low and high power trees 20 Feb 2010
• Updating manuscript 16 Feb 2010
• Parametric bootstrapping 15 Feb 2010
• Follow-up on Parametric Bootstrapping 10 Feb 2010
• Meeting with Graham and Peter 09 Feb 2010
• Exploring Difficulties with Existing Methods 07 Feb 2010

Primates

• Annual Progress Report 17 May 2010
• Primates 05 May 2010
• Adaptive Dynamics 29 Apr 2010
• Primate chronogram 12 Apr 2010
• Research 09 Apr 2010
• Power in Trees 18 Feb 2010

code-tricks

• Entry title 01 Sep 2010
• Warning Signals 16 Aug 2010
• CSGF Survey 31 May 2010
• Summary of Structured Population noise so far 27 May 2010
• Annual Progress Report 17 May 2010
• Warning Signals with SDEs 09 May 2010
• Goals 06 May 2010
• Primates 05 May 2010
• Adaptive Dynamics 22 Apr 2010
• Research 19 Apr 2010
• iEvoBio Submission 16 Apr 2010
• Research 09 Apr 2010
• Research 25 Mar 2010
• Parallel R 24 Mar 2010
• Research 19 Mar 2010
• Big Picture Comparative Phylogenetics 04 Mar 2010
• Solution to the strange behavior in ouch 03 Mar 2010
• The Ergodicity Question- Time averaging vs Ensemble averaging 25 Feb 2010

Labrids

• Parameter Estimates for Labrid-Parrotfish model 27 Jul 2010
• Parrotfish-Wrasse example 15 Jul 2010
• Research 19 Apr 2010
• Comparative Phylogenetics Notebook 08 Apr 2010
• Research 05 Apr 2010
• Research 02 Apr 2010
• Comparative Phylogenetics Notebook 31 Mar 2010
• Research 30 Mar 2010
• Parallel R 24 Mar 2010
• Research 17 Mar 2010
• Computing 15 Mar 2010
• Bodega Workshop Presentations 12 Mar 2010

open-science

• Entry title 01 Sep 2010
• Adaptive Dynamics 30 Aug 2010
• Adaptive Dynamics 13 May 2010
• Adaptive Dynamics 13 May 2010
• Adaptive Dynamics 21 Apr 2010
• Comparative Phylogenetics Notebook 08 Apr 2010
• Research 06 Apr 2010

conference

• Open Science Summit 29 Jul 2010
• Evolution 2010 Day 3 28 Jun 2010
• Graham & Peter Meeting 09 Jun 2010
• iEvoBio lightning talk 27 Apr 2010
• iEvoBio Submission 16 Apr 2010
• Teaching 12 Apr 2010

seminar

• CPB : David Collar 01 Dec 2010
• Tues seminar 16 Nov 2010

derivation

• Tues: Fitting the limiting OU models to each bifurcation 30 Nov 2010
• Further treatment of the limiting models 29 Nov 2010
• Likelihoods for quadratic models cont 28 Nov 2010
• Warning signals: Likelihoods Straight-up 24 Nov 2010

blog

• Thoughts on the New Policies for Data Archiving at NSF and in Common Journals 03 Dec 2010

R

• socialR: Reproducible Research & Notebook integration with R 11 Dec 2010

progress-summary

• DoE renewal and a year in review 24 Dec 2010