Tags

blog-post

Haldanes Sieve Guest Post 08 Jan 2013

warning-signals

Notes 10 Dec 2013
Notes 08 Oct 2013
Regime Vs State 30 Sep 2013
Nsf Math Bio Postdoc 06 Sep 2013
Summarizing Earlier Warning Signal Under Control Notes 06 Aug 2013
Notes 20 May 2013
Notes 16 May 2013
Notes 18 Apr 2013
Notes 17 Apr 2013
a few notes on various projects 16 Apr 2013
Notes 15 Apr 2013
Tutorial On Likelihood And Roc Methods For Early Warning Signals 11 Apr 2013
nonparametric-bayes: framing the issues for the manuscript 11 Apr 2013
A Clever Derivation On Realized Escape Times 05 Apr 2013
Research 22 Mar 2013
Collected notes from past few days 19 Mar 2013
Notes From The Week 08 Mar 2013
Ews Review Paper Chat 11 Feb 2013
Tipping Points Comment In Nature 12 Jan 2013

my-publications

Tipping Points Comment In Nature 12 Jan 2013

notebook-technology

DOI != citable 03 Jun 2013
Notebook features: digital archiving 31 May 2013
Archiving the lab notebook on figshare 31 May 2013
Notebook features: SHA Hashes 03 May 2013
Notebook features: reproducible code 26 Apr 2013
Notebook features: an introduction 26 Apr 2013
Notebook tweaks: APIs in Ruby, Github hosting 10 Apr 2013
Notebook Features: parsing linked data in the semantic notebook 04 Apr 2013
Notes From The Week 08 Mar 2013
Data Uris For Image Archives 24 Jan 2013

open-science

Notes 09 Oct 2013
Isees Workforce Development Day 2 11 Sep 2013
Isees Training Workshop Day 1 10 Sep 2013
Notes 23 Aug 2013
Isees Day 2 14 Aug 2013
ISEES software lifecycle and components workshop, Day 1 13 Aug 2013
Esa 2013 Notes For Week 08 Aug 2013
Xml Parsing Strategies 22 Jul 2013
Notes 16 May 2013
Updates Across Various Projects 04 Feb 2013

pdg-control

Mbi Day Three 06 Nov 2013
Mbi Day Two 05 Nov 2013
Mbi Notes 04 Nov 2013
Summarizing Earlier Warning Signal Under Control Notes 06 Aug 2013
Notes 20 May 2013
Notes 13 May 2013
Updates Across Various Projects 04 Feb 2013

reading

Notes 16 Sep 2013
Notes 24 Jun 2013
Notes On Leveraging The Ecological Markup Language 23 Jun 2013
Notes 17 Apr 2013
nonparametric-bayes: framing the issues for the manuscript 11 Apr 2013
Monday Tuesday 02 Apr 2013
Notes 14 Mar 2013
Notes 27 Feb 2013
Notes 21 Feb 2013
Notes 12 Feb 2013
Updates Across Various Projects 04 Feb 2013

nonparametric-bayes

Notes 19 Nov 2013
Notes 23 Sep 2013
Notes 19 Sep 2013
Notes 18 Sep 2013
Nsf Math Bio Postdoc 06 Sep 2013
Nonparametric Bayes Wrapping Up Sensitivity 28 Jul 2013
Visit To Whoi 11 Jul 2013
Nonparametric Bayes Summary Ideas 20 Jun 2013
Figure For Summarizing Simulations 18 Jun 2013
Semi Analytic Posteriors 05 Jun 2013
Sensitivity Of Gp Comparisons In Further Examples 04 Jun 2013
Analytic Marginalizing For Posteriors 04 Jun 2013
Admb Basic Example 03 Jun 2013
Notes 29 May 2013
Notes 28 May 2013
Exploring Approximate Dynamic Programming Approaches 27 May 2013
Notes 24 May 2013
Notes 23 May 2013
Notes 22 May 2013
Notes 14 May 2013
Prep for ERE talk 09 May 2013
Notes 07 May 2013
Reading and potential examples for talk to ERE next week 03 May 2013
Integrating Over Posterior Gp 01 May 2013
Bayesian Gp Regression By Metropolis Hastings 01 May 2013
Difficulties with tgp; taking custom mcmc approach for GPs 30 Apr 2013
Finishing Comparison Parametric And Nonparametric 29 Apr 2013
A comparison of nonparametric Bayesian Gaussian process estimates to standard the parametric Bayesian approach 27 Apr 2013
Notes 25 Apr 2013
Bayesian Parametric Uncertainty Sdp 19 Apr 2013
Notes 18 Apr 2013
Notes 15 Apr 2013
Parametric Bayesian Example 12 Apr 2013
nonparametric-bayes: framing the issues for the manuscript 11 Apr 2013
Further Examples Managing Tipping Points With Gp 03 Apr 2013
Monday Tuesday 02 Apr 2013
Research 26 Mar 2013
Research 20 Mar 2013
Collected notes from past few days 19 Mar 2013
Notes 12 Mar 2013
Notes From The Week 08 Mar 2013
Notes 28 Feb 2013
Notes 21 Feb 2013
Notes 13 Feb 2013
Notes 12 Feb 2013

ropensci

Notes 26 Nov 2013
Notes 19 Nov 2013
Rnexml Metadata Queries 17 Nov 2013
Notes 14 Nov 2013
Mbi Day Five Notes 08 Nov 2013
Mbi Day Two 05 Nov 2013
Mbi Notes 04 Nov 2013
Rnexml Semantic Considerations 17 Oct 2013
Notes 16 Oct 2013
Notes 10 Oct 2013
Notes 09 Oct 2013
Extending ape::phylo class to NeXML: 07 Oct 2013
Notes 23 Sep 2013
Notes 19 Sep 2013
Notes 18 Sep 2013
Notes 16 Sep 2013
Some Rfishbase Updates 08 Sep 2013
Rnexml Milestone 07 Sep 2013
Reml Milestone 02 Sep 2013
Rnexml Coding 28 Aug 2013
Notes 26 Aug 2013
Notes 01 Aug 2013
Formal Semantics With Reml 25 Jul 2013
Xml Parsing Strategies 22 Jul 2013
Notes from chat with Duncan 19 Jul 2013
Reml Update 08 Jul 2013
Starting An Eml Package For R 26 Jun 2013
Notes 24 Jun 2013
Notes On Leveraging The Ecological Markup Language 23 Jun 2013
Notes 13 Jun 2013
Notes 20 May 2013
Notes 17 Apr 2013
Collected notes from past few days 19 Mar 2013
Notes 14 Feb 2013
Notes 13 Feb 2013
Notes 12 Feb 2013

seminar

Notes 27 Feb 2013
Seminar Notes 20 Feb 2013

semantics

Formal Semantics With Reml 25 Jul 2013
Notes On Leveraging The Ecological Markup Language 23 Jun 2013
Notebook Features: parsing linked data in the semantic notebook 04 Apr 2013
Notes 28 Feb 2013
Semantic Citations For The Notebook And Knitr 22 Feb 2013

knitcitations

a few notes on various projects 16 Apr 2013
Semantic Citations For The Notebook And Knitr 22 Feb 2013

blog

So, you're active on Research Gate? 14 Nov 2013
Do we need a culture of Data Science in Academia? 13 Nov 2013
Is it time to retire Pagel's lambda? 11 Oct 2013
Reflections on the Mozilla Science Code Review Pilot 25 Sep 2013
Forking The R Journal 10 Jul 2013
Reviewing Software Revisited 09 Jul 2013
What I look for in 'Software Papers' 13 Jun 2013
manuscript reviews on github? 10 Jun 2013
DOI != citable 03 Jun 2013
Notebook features: digital archiving 31 May 2013
Archiving the lab notebook on figshare 31 May 2013
Comforting Trends In Scientific Software Use 21 May 2013
Notebook features: SHA Hashes 03 May 2013
Scholarly Infrastructure Thoughts 02 May 2013
Musings On Conservation Literature 02 May 2013
Notebook features: reproducible code 26 Apr 2013
Notebook features: an introduction 26 Apr 2013
Notebook Features: parsing linked data in the semantic notebook 04 Apr 2013
Semantic Citations For The Notebook And Knitr 22 Feb 2013

multiple-uncertainty

Research 26 Mar 2013
Research 22 Mar 2013
Research 20 Mar 2013
Notes 13 Mar 2013
Notes 12 Mar 2013

prosecutor

Notes 20 May 2013
Null Distribution Width Minor Puzzle 17 May 2013
Notes 16 May 2013
Notes 13 May 2013
A Clever Derivation On Realized Escape Times 05 Apr 2013
Prosecutor Fallacy As Large Deviations 19 Mar 2013
Collected notes from past few days 19 Mar 2013

algorithms

Exploring Approximate Dynamic Programming Approaches 27 May 2013
Research 20 Mar 2013

code-tricks

Extending ape::phylo class to NeXML: 07 Oct 2013
Extending Data Frame Class 11 Sep 2013
Nonparametric Bayes Wrapping Up Sensitivity 28 Jul 2013
Notes 24 Jun 2013
Notes 28 May 2013
Notes 18 Apr 2013
a few notes on various projects 16 Apr 2013
Notebook tweaks: APIs in Ruby, Github hosting 10 Apr 2013
Research 25 Mar 2013
Research 22 Mar 2013

derivation

Notes 10 Dec 2013
Semi Analytic Posteriors 05 Jun 2013
Analytic Marginalizing For Posteriors 04 Jun 2013
Empirical Demonstration Of That Clever Derivation 24 Apr 2013
A Clever Derivation On Realized Escape Times 05 Apr 2013

adaptive-dynamics

Notes 29 Aug 2013
A Clever Derivation On Realized Escape Times 05 Apr 2013

phylogenetics

a few notes on various projects 16 Apr 2013

pmc

We Need More Object Oriented Design In Comparative Methods 23 Apr 2013
Notes 18 Apr 2013

conservation

Musings On Conservation Literature 02 May 2013

group-meeting

Notes 28 May 2013

interview

Notes For Van Noorden Chat 17 Jun 2013

eml

Formal Semantics With Reml 25 Jul 2013
Notes from chat with Duncan 19 Jul 2013
Reml Update 08 Jul 2013
Starting An Eml Package For R 26 Jun 2013
Notes 24 Jun 2013
Notes On Leveraging The Ecological Markup Language 23 Jun 2013

R

Extending ape::phylo class to NeXML: 07 Oct 2013
Forking The R Journal 10 Jul 2013

conference

Mbi Day Five Notes 08 Nov 2013
Mbi Day Four Notes 07 Nov 2013
Mbi Day Three 06 Nov 2013
Mbi Day Two 05 Nov 2013
Mbi Notes 04 Nov 2013
Isees Workforce Development Day 2 11 Sep 2013
Isees Training Workshop Day 1 10 Sep 2013
Isees Day 2 14 Aug 2013
ISEES software lifecycle and components workshop, Day 1 13 Aug 2013
Esa 2013 Notes For Week 08 Aug 2013
Visit To Whoi 11 Jul 2013

site-configuration

Updates On Managing References 17 Jul 2013

xml-standards

Xml Parsing Strategies 22 Jul 2013

misc

Notes 01 Aug 2013

policy-costs

Notes 26 Aug 2013

rnexml

Rnexml Semantic Considerations 17 Oct 2013
Notes 16 Oct 2013
Extending ape::phylo class to NeXML: 07 Oct 2013
Rnexml Coding 28 Aug 2013

pdg_control

Mbi Day Four Notes 07 Nov 2013

informatics

Rnexml Metadata Queries 17 Nov 2013

RNeXML

Rnexml Metadata Queries 17 Nov 2013

nexml

Notes 26 Nov 2013
Notes 19 Nov 2013