MDPToolbox testing
- Debugging RPub record
- Fails even if we restrict R to be finite (
h < 1) - Different error if we try the optimal harvest
Reading
- Operating Systems Review reproducibility special issue now out; (includes my article on Docker). Table of contents
Reviewing
- PNAS review: done (2015-01-26).
- Bioinformatics review.
- JSS review: done.
Docker
Continuous Integration
Finally a way to run generic docker images on free CI: circle-ci
Adding private keys to Travis requires too much of a dance (encrypting credentials into .travis.yml; on Circle-CI, like Drone, these can just be configured through the Circle-CI web interface. Travis has no way to restart a stochastically failed build without another commit, doesn’t display the logs in a convenient summary, and doesn’t support deploying as first-class configuration step (though easy enough to hack it of course)
Sample configuration:
machine:
services:
- docker
dependencies:
override:
- docker info
- docker build -t circleci/elasticsearch .
test:
override:
- docker run -d -p 9200:9200 circleci/elasticsearch; sleep 10
- curl --retry 10 --retry-delay 5 -v https://localhost:9200
deployment:
hub:
branch: master
commands:
- docker login -e $DOCKER_EMAIL -u $DOCKER_USER -p $DOCKER_PASS
- docker push circleci/elasticsearch