Wrote plotting function for wrightscape MCMC analysis
added support to write MCMC to a file.
exploring divergent MCMCs. more checks on NaNs
trying MLE initiated MCMC
Revising talk for evolution
tweaks to socialR reporting – include error message, exit with status=1, fewer time sigfigs; see gitlog.
Max likelihoods & bootstraps
Parrotfish protrusion (size corrected, 400 reps)
If thetas are different and not allowed to vary, the alpha model will obviously do worse than the sigma model, even if it is correct.
Alpha
Sigma
Alpha vs Sigma
Parrotfish Closing Lever Ratio (400 reps)
sigma-theta
alpha-theta
alpha-theta vs sigma-theta:
All Labrids, (size corrected) Protrusion, (400 reps)
alpha
Need (now running):
all labrids, prot.y alpha v sigma (one, n12)
all labrids prot.y alpha-theta v sigma-theta (running on zero)
parrotfish closing ratio alpha v sigma (one, n18)
parrotfish prot.y alpha-theta vs sigma-theta (one, n19)