Finished review for TE
Shared post on TreeBASE API
Reviewed Scott’s updates to dryad R API, adjusted formatting.
Looking at documentation for the OAI-MPH queries, don’t seem to be as rich as Phylo-ws queries. This is why treeBASE metadata searches tend to download the full metadata set into R and query that. Looks like we’ll need to take a similar approach to Dryad, as it doesn’t seem like there’s a way to query the API by author name at all?
run of Parrotfish example with intensive simulated annealing.
- Working on MCMCMC implementation and testing, see (Altekar et. al. 2004)
Today results summary:
[flickr-gallery mode=“search” tags=“phylogenetics” min_upload_date=“2011-05-17 00:00:00” max_upload_date=“2011-05-18 06:59:59”]
References
- Altekar G, Dwarkadas S, Huelsenbeck J and Ronquist F (2004). “Parallel Metropolis Coupled Markov Chain Monte Carlo For Bayesian Phylogenetic Inference.” Bioinformatics, 20. ISSN 1367-4803, https://dx.doi.org/10.1093/bioinformatics/btg427.