[toc]
Refining examples
Updating finished runs to full formats
Condensing/organizing code examples under the demos to follow the structure of the paper.
Currently plotting code for manuscript loads a menagerie of different run results from different files. Would be better to consolidate by dataset.
Proposed figure changes
Consider multiple empirical examples in main text
Consider removing skew/kurtosis examples to the supplement?
Consider other empirical examples
Additional examples to the supplementary information, at least of a case where likelihood also has inadequate power
Consider a low-sample size version of ibm simulation
Consider replacing the linearized simulation with the ibm simulation
Figure formatting guidelines (submission stage):
Preferred format is jpeg, 150 dpi
figures rendered in the size they appear in the manuscript (single column is 89mm, double column width is 183 mm)
follow naming convention Boettiger_fig1.jpg, etc
… Getting images adjusted for small size – that took a while, seegit commit.
shrink ticks, move text, set axis intervals.
All figures set to single column width, decide if any should be double-column? (doesn’t seem typical).
Revisions and Edits
Incorporated Marcel’s edits.
Awaiting Marissa’s edits.
Just sent to Alex for edits this morning, back this afternoon.
Incorporating Alex’s edits now.
Reviewed** cover letter **with Alan, adding details about figures, word counts, etc. awaiting comments on my revisions.
Further Examples
drake reanalyze figure3 failed (nice 16 on zero) due to labeling error in plotting function (after all computations finished but no data save – highlighting the need for checkpointing my code!)
Rerunning at nice 19 on zero 16 reps, Completed
and at nice 18 the full 2000 replicates on zero.
ibm_likelihood.R terminated(?) Running at 80 replicates at nice 17 on zero